PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6197
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YB
Protein Properties Length: 138aa    MW: 15382.3 Da    PI: 5.0748
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6197genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1741.6e-5420113497
                     NF-YB   4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                               q+r+lPianv+rimkk+lPa+akisk++ket+qecvsefisf+t+eas+kcq+ekrktingddllwa++tlGfe+y+eplk yl+
  Tp57577_TGAC_v2_mRNA6197  20 QERLLPIANVGRIMKKALPAKAKISKESKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLLWAMTTLGFEEYAEPLKGYLH 104
                               89*********************************************************************************** PP

                     NF-YB  89 kyrelegek 97 
                               +yre+eg+k
  Tp57577_TGAC_v2_mRNA6197 105 RYREIEGDK 113
                               *******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5019118IPR009072Histone-fold
SuperFamilySSF471134.19E-3920116IPR009072Histone-fold
PfamPF008089.8E-282387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-205169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.6E-207088No hitNo description
PRINTSPR006152.6E-2089107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MAESDDESGG QASGSRELLQ ERLLPIANVG RIMKKALPAK AKISKESKET MQECVSEFIS  60
FITGEASEKC QKEKRKTING DDLLWAMTTL GFEEYAEPLK GYLHRYREIE GDKNFSMSMI  120
GKEQQGSSST DNRFFQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4520108492Transcription factor HapC (Eurofung)
4g92_B2e-4520108492Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182811e-141JQ918281.1 Medicago truncatula nuclear trancsription factor Y subunit B8 (NF-YB8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458655.12e-84nuclear transcription factor Y protein
SwissprotO233103e-60NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLI3TAW62e-84I3TAW6_MEDTR; Nuclear trancsription factor Y subunit B8
STRINGGLYMA15G12570.15e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-61nuclear factor Y, subunit B3